IB Biology SL: Theme B - Form & Function
B1.1 - Carbohydrates & Lipids
Building Blocks of Life: Organic Molecules
🧪 Introduction to Biological Molecules
Carbohydrates and lipids are two of the four major groups of biological macromolecules essential for life. They are organic compounds built primarily from carbon atoms, which have unique chemical properties that allow for the formation of diverse and complex molecular structures.
Carbohydrates serve as primary energy sources and structural components, while lipids function in energy storage, cell membranes, and signaling. Understanding their structure, formation, and function is fundamental to comprehending how living organisms operate at the molecular level.
This topic explores the chemistry of carbon, the reactions that build and break down these molecules, and the diverse roles they play in biological systems.
⚛️ Tetravalency of Carbon
Why is Carbon Special?
Carbon (atomic number 6) is the backbone of all organic molecules and the basis of life on Earth. Its unique properties make it ideally suited for forming the complex molecules needed for biological systems.
🔬 Electronic Configuration of Carbon
Electron Configuration:
1s² 2s² 2p²
6
Total Electrons
4
Valence Electrons
Carbon has 2 electrons in the first shell and 4 electrons in the second (outer) shell. These 4 electrons in the outermost shell are called valence electrons and are available for bonding.
What is Tetravalency?
Tetravalency means carbon has a valency of four—it can form four covalent bonds with other atoms (including other carbon atoms).
Why Four Bonds?
- Carbon needs 8 electrons in its outer shell to be stable (octet rule)
- It has 4 valence electrons, so needs 4 more electrons
- By sharing its 4 electrons with 4 other atoms, carbon achieves stability
- Each shared pair of electrons = one covalent bond
- Result: Carbon can form 4 covalent bonds
Consequences of Tetravalency
1. Diverse Molecular Structures
Carbon can form straight chains, branched chains, rings, and complex 3D structures. This versatility allows for millions of different organic compounds.
2. Catenation
Catenation is the ability of carbon atoms to bond with each other to form long chains or rings. This is unique to carbon and silicon, but carbon does it much more effectively.
3. Multiple Bond Types
Carbon can form single bonds (C-C), double bonds (C=C), and triple bonds (C≡C), creating even more molecular diversity.
4. Bonds with Many Elements
Carbon readily forms stable bonds with hydrogen (H), oxygen (O), nitrogen (N), sulfur (S), and phosphorus (P)—all essential elements for life.
5. Stable but Reactive
Carbon-carbon and carbon-heteroatom bonds are stable enough to maintain molecular structure but reactive enough for biological transformations.
📝 Simple Examples of Carbon Compounds
Compound | Formula | Carbon Bonds |
---|---|---|
Methane | CH4 | 4 single bonds with hydrogen |
Ethane | C2H6 | 1 C-C bond + 3 C-H bonds per carbon |
Carbon Dioxide | CO2 | 2 double bonds with oxygen (O=C=O) |
Glucose | C6H12O6 | Multiple C-C, C-H, and C-O bonds in ring structure |
🔑 Key Point: The tetravalency of carbon is the foundation for the incredible diversity of organic molecules, making carbon-based life possible.
🔗 Condensation and Hydrolysis Reactions
Condensation and hydrolysis are two opposite chemical reactions that are fundamental to the formation and breakdown of biological macromolecules (polymers) from/into their building blocks (monomers).
These reactions connect small molecules (monomers) into large molecules (polymers) and break them apart again when needed.
➕ Condensation Reactions (Building Polymers)
Definition
A condensation reaction (also called dehydration synthesis) is a chemical reaction where:
- Two smaller molecules (monomers) join together
- A covalent bond forms between them
- A water molecule (H₂O) is released as a byproduct
- Result: A larger molecule (polymer) is formed
How Does It Work?
Step-by-Step Process:
- Monomer A has a hydroxyl group (-OH)
- Monomer B has a hydrogen atom (-H)
- The -OH from one monomer and the -H from the other combine to form H₂O (water)
- The two monomers are now bonded together where the -OH and -H were removed
- A new covalent bond is formed (specific type depends on the molecules)
General Equation:
Monomer A + Monomer B → Polymer + H2O
Examples of Condensation Reactions
Monomers | Polymer Formed | Bond Type |
---|---|---|
Monosaccharides (e.g., glucose) | Polysaccharides (e.g., starch, glycogen) | Glycosidic bond |
Amino acids | Polypeptides/Proteins | Peptide bond |
Nucleotides | Nucleic acids (DNA/RNA) | Phosphodiester bond |
Glycerol + Fatty acids | Triglycerides (lipids) | Ester bond |
➖ Hydrolysis Reactions (Breaking Down Polymers)
Definition
A hydrolysis reaction is a chemical reaction where:
- A larger molecule (polymer) is broken down
- A water molecule (H₂O) is used/consumed
- The covalent bond between monomers is broken
- Result: Two smaller molecules (monomers) are produced
"Hydrolysis" = hydro (water) + lysis (to break)
How Does It Work?
Step-by-Step Process:
- Water molecule (H₂O) is added to the polymer
- The covalent bond between two monomers is broken
- The water splits into H⁺ and OH⁻
- One monomer gains the -OH group
- The other monomer gains the -H atom
- Two separate monomers are now produced
General Equation:
Polymer + H2O → Monomer A + Monomer B
Examples of Hydrolysis Reactions
Polymer | Monomers Produced | Where It Occurs |
---|---|---|
Starch/Glycogen | Glucose (monosaccharide) | Digestion (mouth, small intestine) |
Proteins | Amino acids | Digestion (stomach, small intestine) |
DNA/RNA | Nucleotides | Cell nucleus, digestion |
Triglycerides | Glycerol + Fatty acids | Digestion (small intestine) |
🔬 Biological Significance:
Hydrolysis is essential for digestion. Large food molecules (polymers) cannot be absorbed by cells, so digestive enzymes catalyze hydrolysis reactions to break them into small, absorbable monomers.
⚖️ Condensation vs. Hydrolysis: Opposite Reactions
Feature | Condensation | Hydrolysis |
---|---|---|
Direction | Monomers → Polymer | Polymer → Monomers |
Water | Released (produced) | Consumed (used) |
Bonds | Formed | Broken |
Type of Reaction | Synthesis/Anabolic | Breakdown/Catabolic |
Biological Example | Building glycogen from glucose | Digesting starch into glucose |
Requires Energy? | Usually requires energy input | Usually releases energy |
🔑 Key Point: Condensation and hydrolysis are reversible, opposite reactions. Both require enzymes to occur at biologically useful rates.
🍬 Monosaccharides and Polysaccharides
Carbohydrates are organic molecules composed of carbon, hydrogen, and oxygen, typically in a ratio of 1:2:1. The general formula is (CH2O)n, where n is the number of carbon atoms.
Carbohydrates are classified by size into monosaccharides (single sugars), disaccharides (two sugars), and polysaccharides (many sugars).
🔶 Monosaccharides: Simple Sugars
Definition & Structure
Monosaccharides are the simplest carbohydrates—single sugar units that cannot be hydrolyzed into simpler sugars. They are the monomers of carbohydrates.
Key Properties:
- Soluble in water (polar molecules with many -OH groups)
- Sweet taste
- White crystalline solids at room temperature
- General formula: (CH2O)n where n = 3 to 7
- Reducing sugars (can donate electrons in redox reactions)
Types of Monosaccharides
Type | Carbons | Examples |
---|---|---|
Triose | 3 | Glyceraldehyde (C3H6O3) |
Pentose | 5 | Ribose (RNA), Deoxyribose (DNA) |
Hexose | 6 | Glucose, Fructose, Galactose (C6H12O6) |
🔍 Glucose: The Most Important Monosaccharide
Molecular Formula: C6H12O6
Glucose is a hexose sugar (6 carbons) and the primary energy source for most organisms. It exists in both linear and ring forms, with the ring form predominating in solution.
Two Isomers of Glucose:
α-Glucose (Alpha)
The -OH group on carbon 1 is below the ring plane. The H is above.
Forms: Starch, Glycogen
β-Glucose (Beta)
The -OH group on carbon 1 is above the ring plane. The H is below.
Forms: Cellulose
🔑 Key Point:
The difference between α and β glucose is just the position of the -OH group on carbon 1, but this small difference has huge consequences for the properties of polymers they form!
Functions of Monosaccharides
- Energy source: Glucose is the primary fuel for cellular respiration
- Building blocks: Monomers for larger carbohydrates (disaccharides, polysaccharides)
- Nucleic acid components: Ribose (in RNA) and deoxyribose (in DNA)
- Metabolic intermediates: Used in many biosynthetic pathways
🔗 Disaccharides: Two Sugar Units
Disaccharides are formed when two monosaccharides join together via a condensation reaction, forming a glycosidic bond and releasing water.
Disaccharide | Components | Found In |
---|---|---|
Maltose | Glucose + Glucose | Germinating seeds, beer |
Sucrose | Glucose + Fructose | Table sugar, plant sap |
Lactose | Glucose + Galactose | Milk, dairy products |
🔗🔗 Polysaccharides: Complex Carbohydrates
Definition & Structure
Polysaccharides are complex carbohydrates composed of many monosaccharide units (typically hundreds to thousands) joined by glycosidic bonds through condensation reactions.
Key Properties:
- Insoluble or poorly soluble in water (due to large size)
- Not sweet
- Compact storage molecules (don't affect osmotic pressure)
- Can be branched or unbranched
- Serve as energy storage or structural support
🌾 1. Starch (Plant Energy Storage)
Composition: Polymer of α-glucose
Starch is the primary energy storage molecule in plants. It is stored in chloroplasts (as small granules) and in storage organs like roots, tubers, and seeds.
Two Components:
- Amylose (10-30%): Unbranched chain of α-glucose in α-1,4 glycosidic bonds. Forms a helix structure. Compact.
- Amylopectin (70-90%): Branched chain with α-1,4 bonds in chains and α-1,6 bonds at branch points (every 25-30 glucose units). Highly branched = rapid glucose release.
Functions:
- Energy storage in plants
- Compact and insoluble (doesn't affect water potential)
- Easily broken down to glucose when energy is needed
- Major component of human diet (potatoes, rice, wheat, corn)
🦴 2. Glycogen (Animal Energy Storage)
Composition: Polymer of α-glucose
Glycogen is the primary energy storage molecule in animals and fungi. It is stored mainly in the liver and muscles.
Structure:
- Similar to amylopectin but MORE highly branched
- Branches occur every 8-12 glucose units
- α-1,4 glycosidic bonds in chains; α-1,6 bonds at branch points
- More compact than starch
Functions:
- Short-term energy storage in animals
- Stored in liver (maintains blood glucose) and muscles (for muscle contraction)
- Highly branched = VERY RAPID glucose release when energy is needed
- Compact and insoluble
🔍 Why highly branched? More branch points = more ends where enzymes can simultaneously break off glucose = faster mobilization of energy!
Starch vs. Glycogen
Feature | Starch | Glycogen |
---|---|---|
Found In | Plants | Animals, fungi |
Monomer | α-glucose | α-glucose |
Branching | Less branched (every 25-30 units) | More branched (every 8-12 units) |
Compactness | Compact | More compact |
Glucose Release | Slower | Very rapid |
Storage Location | Chloroplasts, storage organs | Liver, muscles |
🌳 Cellulose: Structural Polysaccharide
Structure & Function of Cellulose
What is Cellulose?
Cellulose is a structural polysaccharide found in plant cell walls. It is the most abundant organic compound on Earth, making up about 33% of all plant matter.
Composition: Polymer of β-glucose units
Molecular Structure
Key Structural Features:
- Monomer: β-glucose units (NOT α-glucose)
- Bonds: β-1,4 glycosidic bonds between glucose units
- Chain length: 500-14,000 glucose molecules per cellulose chain
- Configuration: Alternate β-glucose molecules are rotated 180° relative to neighbors
- Shape: Long, straight, unbranched chains
🔑 Critical Difference from Starch/Glycogen:
Because cellulose is made of β-glucose (not α-glucose), every other glucose molecule is flipped upside-down. This allows the chains to pack tightly together in straight, parallel arrangements.
Microfibrils and Hydrogen Bonding
Formation of Microfibrils:
- Multiple cellulose chains (40-70) run parallel to each other
- Hydrogen bonds form between -OH groups on adjacent chains
- These bonds hold the chains together tightly
- Creates cellulose microfibrils—bundles of cellulose chains
- Microfibrils are crystalline (highly ordered) and very strong
💪 Strength: Cellulose microfibrils have tensile strength comparable to steel! The extensive hydrogen bonding between chains makes cellulose extremely strong and rigid.
Functions of Cellulose
1. Structural Support in Plant Cell Walls
Cellulose is the main component of plant cell walls. It provides rigidity and strength, allowing plants to stand upright and maintain their shape. Without cellulose, plants would collapse.
2. Resists Turgor Pressure
Plant cells have high internal water pressure (turgor). Cellulose walls prevent cells from bursting, allowing plants to maintain turgidity.
3. Dietary Fiber for Humans
Humans cannot digest cellulose (we lack the enzyme cellulase), but it functions as dietary fiber, aiding digestion and promoting bowel health.
4. Industrial Uses
Cellulose is used to make paper, cardboard, textiles (cotton, linen), biofuels, and many other products.
Why Can't Humans Digest Cellulose?
The β-1,4 glycosidic bonds in cellulose require the enzyme cellulase to break them. Humans do not produce cellulase.
We CAN digest starch (α-1,4 bonds) because we produce amylase enzymes.
🐄 Ruminants (cows, sheep) and termites CAN digest cellulose because they harbor symbiotic bacteria/protozoa in their guts that produce cellulase.
⚖️ Starch vs. Cellulose: Why So Different?
Feature | Starch | Cellulose |
---|---|---|
Monomer | α-glucose | β-glucose |
Bond Type | α-1,4 and α-1,6 glycosidic | β-1,4 glycosidic |
Structure | Coiled/branched | Straight, unbranched |
Function | Energy storage | Structural support |
Digestible by Humans? | Yes (amylase enzyme) | No (lack cellulase enzyme) |
Hydrogen Bonding | Limited, flexible | Extensive, rigid |
Strength | Weak | Very strong (like steel) |
🔬 Glycoproteins
What are Glycoproteins?
Glycoproteins are conjugated proteins—molecules composed of a protein covalently bonded to one or more carbohydrate (sugar) chains. They are formed through a process called glycosylation.
Glyco = sugar/carbohydrate | Protein = polypeptide chain
Structure of Glycoproteins
Components
- Protein component: Polypeptide chain (made of amino acids)
- Carbohydrate component: Oligosaccharides (short sugar chains, typically 2-15 sugar units)
- Bond: Covalent glycosidic bond between protein and carbohydrate
Types of Glycosylation
1. N-Linked Glycosylation
Carbohydrate attaches to the nitrogen (N) atom in the side chain of the amino acid asparagine. Occurs in the endoplasmic reticulum and Golgi apparatus.
2. O-Linked Glycosylation
Carbohydrate attaches to the oxygen (O) atom in the -OH group of amino acids serine or threonine. Occurs primarily in the Golgi apparatus.
Functions of Glycoproteins
1. Cell-Cell Recognition
Glycoproteins on cell surfaces act as identification tags. They allow cells to recognize each other as "self" vs. "foreign." Important for immune responses and tissue formation.
2. Cell Adhesion
Help cells stick together to form tissues. Glycoproteins bind to other glycoproteins or proteins on adjacent cells, holding tissues together.
3. Cell Signaling (Receptors)
Many membrane receptor proteins are glycoproteins. The carbohydrate portion helps receptors bind to signaling molecules (hormones, growth factors).
4. Immune Response
Antibodies (immunoglobulins) are glycoproteins. Blood group antigens (A, B, O) are determined by glycoproteins on red blood cells.
5. Structural Stability
The carbohydrate portion makes proteins more stable and soluble. It protects proteins from degradation.
6. Lubrication and Protection
Mucins are glycoproteins in mucus that lubricate and protect epithelial surfaces (respiratory tract, digestive system).
Examples of Glycoproteins
Glycoprotein | Location/Function |
---|---|
Antibodies (IgG, IgM) | Blood; immune defense against pathogens |
Blood group antigens (A, B, O) | Red blood cell surface; determine blood type |
Mucins | Mucus; lubricate and protect epithelial surfaces |
Hormones (e.g., FSH, LH, hCG) | Blood; regulate physiological processes |
Receptor proteins | Cell membranes; cell signaling |
Collagen | Connective tissue; structural support |
🔑 Key Point: Glycoproteins form the glycocalyx—a carbohydrate-rich layer on the outer surface of cell membranes that plays crucial roles in cell recognition, adhesion, and protection.
💧 Lipids and Phospholipids
What are Lipids?
Lipids are a diverse group of hydrophobic (water-insoluble) or amphipathic (partially water-soluble) organic molecules. Unlike carbohydrates and proteins, lipids are not polymers—they don't consist of repeating monomer units.
Lipids are primarily composed of carbon, hydrogen, and oxygen, but have a much lower proportion of oxygen than carbohydrates.
🧈 Triglycerides (Fats and Oils)
Structure of Triglycerides
Triglycerides are the most common type of lipid. They are formed by condensation reactions between:
Components:
- 1 glycerol molecule: A 3-carbon alcohol with 3 hydroxyl (-OH) groups
- 3 fatty acid molecules: Long hydrocarbon chains with a carboxyl group (-COOH) at one end
Formation:
- Each fatty acid undergoes a condensation reaction with one of the -OH groups on glycerol
- An ester bond forms between glycerol and each fatty acid
- 3 water molecules are released (one per ester bond)
- Result: A triglyceride molecule with 3 ester bonds
Types of Fatty Acids
1. Saturated Fatty Acids
- No double bonds between carbon atoms
- All carbons are "saturated" with hydrogen atoms
- Straight chains that pack tightly together
- Solid at room temperature (e.g., butter, lard)
- Higher melting point
- Found mostly in animal fats
2. Unsaturated Fatty Acids
- One or more double bonds between carbon atoms (C=C)
- Fewer hydrogen atoms than saturated fats
- Kinked/bent chains (due to double bonds) that don't pack tightly
- Liquid at room temperature (oils)
- Lower melting point
- Found mostly in plant oils and fish
- Monounsaturated: 1 double bond (e.g., olive oil)
- Polyunsaturated: Multiple double bonds (e.g., sunflower oil, fish oil)
Functions of Triglycerides
1. Long-Term Energy Storage
Lipids store more than twice as much energy per gram as carbohydrates (9 kcal/g vs. 4 kcal/g). They are the body's main long-term energy reserve.
2. Thermal Insulation
Subcutaneous fat layer insulates against heat loss. Important for maintaining body temperature, especially in cold climates.
3. Protection/Cushioning
Fat pads around organs (kidneys, eyes) absorb shock and protect against physical damage.
4. Buoyancy
Lipids are less dense than water, helping aquatic mammals (whales, seals) float.
🧬 Phospholipids: Cell Membrane Components
Structure of Phospholipids
Phospholipids are modified triglycerides that are the primary structural components of cell membranes.
Components:
- 1 glycerol molecule
- 2 fatty acid chains (not 3 like triglycerides)
- 1 phosphate group (attached to the 3rd position of glycerol)
- Often an additional small molecule attached to the phosphate (e.g., choline, serine)
Formation:
- 2 ester bonds form between glycerol and 2 fatty acids (condensation)
- 1 bond forms between glycerol and phosphate group
- Phosphate may be further linked to another molecule (e.g., choline in phosphatidylcholine)
🔑 Amphipathic Nature of Phospholipids
Phospholipids are amphipathic = they have both hydrophilic and hydrophobic regions
💧 Hydrophilic Head
- Consists of the glycerol and phosphate group
- Polar and often charged
- "Water-loving" - interacts with water
🔥 Hydrophobic Tails
- Consists of the 2 fatty acid chains
- Nonpolar hydrocarbons
- "Water-fearing" - repelled by water
Function: Formation of the Phospholipid Bilayer
When placed in water, phospholipids spontaneously arrange themselves into a bilayer. The hydrophilic heads face the outer and inner aqueous environments, while the hydrophobic tails are shielded in the middle. This bilayer is the fundamental structure of all cell membranes.