IB Biology SL

Carbohydrates & Lipids | Form & Function | IB Biology SL

Carbohydrates & Lipids | Form & Function | IB Biology SL

IB Biology SL: Theme B - Form & Function

B1.1 - Carbohydrates & Lipids

Building Blocks of Life: Organic Molecules

🧪 Introduction to Biological Molecules

Carbohydrates and lipids are two of the four major groups of biological macromolecules essential for life. They are organic compounds built primarily from carbon atoms, which have unique chemical properties that allow for the formation of diverse and complex molecular structures.

Carbohydrates serve as primary energy sources and structural components, while lipids function in energy storage, cell membranes, and signaling. Understanding their structure, formation, and function is fundamental to comprehending how living organisms operate at the molecular level.

This topic explores the chemistry of carbon, the reactions that build and break down these molecules, and the diverse roles they play in biological systems.

⚛️ Tetravalency of Carbon

Why is Carbon Special?

Carbon (atomic number 6) is the backbone of all organic molecules and the basis of life on Earth. Its unique properties make it ideally suited for forming the complex molecules needed for biological systems.

🔬 Electronic Configuration of Carbon

Electron Configuration:

1s² 2s² 2p²

6

Total Electrons

4

Valence Electrons

Carbon has 2 electrons in the first shell and 4 electrons in the second (outer) shell. These 4 electrons in the outermost shell are called valence electrons and are available for bonding.

What is Tetravalency?

Tetravalency means carbon has a valency of four—it can form four covalent bonds with other atoms (including other carbon atoms).

Why Four Bonds?

  • Carbon needs 8 electrons in its outer shell to be stable (octet rule)
  • It has 4 valence electrons, so needs 4 more electrons
  • By sharing its 4 electrons with 4 other atoms, carbon achieves stability
  • Each shared pair of electrons = one covalent bond
  • Result: Carbon can form 4 covalent bonds
Consequences of Tetravalency

1. Diverse Molecular Structures

Carbon can form straight chains, branched chains, rings, and complex 3D structures. This versatility allows for millions of different organic compounds.

2. Catenation

Catenation is the ability of carbon atoms to bond with each other to form long chains or rings. This is unique to carbon and silicon, but carbon does it much more effectively.

3. Multiple Bond Types

Carbon can form single bonds (C-C), double bonds (C=C), and triple bonds (C≡C), creating even more molecular diversity.

4. Bonds with Many Elements

Carbon readily forms stable bonds with hydrogen (H), oxygen (O), nitrogen (N), sulfur (S), and phosphorus (P)—all essential elements for life.

5. Stable but Reactive

Carbon-carbon and carbon-heteroatom bonds are stable enough to maintain molecular structure but reactive enough for biological transformations.

📝 Simple Examples of Carbon Compounds

CompoundFormulaCarbon Bonds
MethaneCH44 single bonds with hydrogen
EthaneC2H61 C-C bond + 3 C-H bonds per carbon
Carbon DioxideCO22 double bonds with oxygen (O=C=O)
GlucoseC6H12O6Multiple C-C, C-H, and C-O bonds in ring structure

🔑 Key Point: The tetravalency of carbon is the foundation for the incredible diversity of organic molecules, making carbon-based life possible.

🔗 Condensation and Hydrolysis Reactions

Condensation and hydrolysis are two opposite chemical reactions that are fundamental to the formation and breakdown of biological macromolecules (polymers) from/into their building blocks (monomers).

These reactions connect small molecules (monomers) into large molecules (polymers) and break them apart again when needed.

➕ Condensation Reactions (Building Polymers)

Definition

A condensation reaction (also called dehydration synthesis) is a chemical reaction where:

  • Two smaller molecules (monomers) join together
  • A covalent bond forms between them
  • A water molecule (H₂O) is released as a byproduct
  • Result: A larger molecule (polymer) is formed
How Does It Work?

Step-by-Step Process:

  1. Monomer A has a hydroxyl group (-OH)
  2. Monomer B has a hydrogen atom (-H)
  3. The -OH from one monomer and the -H from the other combine to form H₂O (water)
  4. The two monomers are now bonded together where the -OH and -H were removed
  5. A new covalent bond is formed (specific type depends on the molecules)

General Equation:

Monomer A + Monomer B → Polymer + H2O

Examples of Condensation Reactions
MonomersPolymer FormedBond Type
Monosaccharides (e.g., glucose)Polysaccharides (e.g., starch, glycogen)Glycosidic bond
Amino acidsPolypeptides/ProteinsPeptide bond
NucleotidesNucleic acids (DNA/RNA)Phosphodiester bond
Glycerol + Fatty acidsTriglycerides (lipids)Ester bond

➖ Hydrolysis Reactions (Breaking Down Polymers)

Definition

A hydrolysis reaction is a chemical reaction where:

  • A larger molecule (polymer) is broken down
  • A water molecule (H₂O) is used/consumed
  • The covalent bond between monomers is broken
  • Result: Two smaller molecules (monomers) are produced

"Hydrolysis" = hydro (water) + lysis (to break)

How Does It Work?

Step-by-Step Process:

  1. Water molecule (H₂O) is added to the polymer
  2. The covalent bond between two monomers is broken
  3. The water splits into H⁺ and OH⁻
  4. One monomer gains the -OH group
  5. The other monomer gains the -H atom
  6. Two separate monomers are now produced

General Equation:

Polymer + H2O → Monomer A + Monomer B

Examples of Hydrolysis Reactions
PolymerMonomers ProducedWhere It Occurs
Starch/GlycogenGlucose (monosaccharide)Digestion (mouth, small intestine)
ProteinsAmino acidsDigestion (stomach, small intestine)
DNA/RNANucleotidesCell nucleus, digestion
TriglyceridesGlycerol + Fatty acidsDigestion (small intestine)

🔬 Biological Significance:

Hydrolysis is essential for digestion. Large food molecules (polymers) cannot be absorbed by cells, so digestive enzymes catalyze hydrolysis reactions to break them into small, absorbable monomers.

⚖️ Condensation vs. Hydrolysis: Opposite Reactions

FeatureCondensationHydrolysis
DirectionMonomers → PolymerPolymer → Monomers
WaterReleased (produced)Consumed (used)
BondsFormedBroken
Type of ReactionSynthesis/AnabolicBreakdown/Catabolic
Biological ExampleBuilding glycogen from glucoseDigesting starch into glucose
Requires Energy?Usually requires energy inputUsually releases energy

🔑 Key Point: Condensation and hydrolysis are reversible, opposite reactions. Both require enzymes to occur at biologically useful rates.

🍬 Monosaccharides and Polysaccharides

Carbohydrates are organic molecules composed of carbon, hydrogen, and oxygen, typically in a ratio of 1:2:1. The general formula is (CH2O)n, where n is the number of carbon atoms.

Carbohydrates are classified by size into monosaccharides (single sugars), disaccharides (two sugars), and polysaccharides (many sugars).

🔶 Monosaccharides: Simple Sugars

Definition & Structure

Monosaccharides are the simplest carbohydrates—single sugar units that cannot be hydrolyzed into simpler sugars. They are the monomers of carbohydrates.

Key Properties:

  • Soluble in water (polar molecules with many -OH groups)
  • Sweet taste
  • White crystalline solids at room temperature
  • General formula: (CH2O)n where n = 3 to 7
  • Reducing sugars (can donate electrons in redox reactions)
Types of Monosaccharides
TypeCarbonsExamples
Triose3Glyceraldehyde (C3H6O3)
Pentose5Ribose (RNA), Deoxyribose (DNA)
Hexose6Glucose, Fructose, Galactose (C6H12O6)
🔍 Glucose: The Most Important Monosaccharide

Molecular Formula: C6H12O6

Glucose is a hexose sugar (6 carbons) and the primary energy source for most organisms. It exists in both linear and ring forms, with the ring form predominating in solution.

Two Isomers of Glucose:

α-Glucose (Alpha)

The -OH group on carbon 1 is below the ring plane. The H is above.

Forms: Starch, Glycogen

β-Glucose (Beta)

The -OH group on carbon 1 is above the ring plane. The H is below.

Forms: Cellulose

🔑 Key Point:

The difference between α and β glucose is just the position of the -OH group on carbon 1, but this small difference has huge consequences for the properties of polymers they form!

Functions of Monosaccharides
  • Energy source: Glucose is the primary fuel for cellular respiration
  • Building blocks: Monomers for larger carbohydrates (disaccharides, polysaccharides)
  • Nucleic acid components: Ribose (in RNA) and deoxyribose (in DNA)
  • Metabolic intermediates: Used in many biosynthetic pathways

🔗 Disaccharides: Two Sugar Units

Disaccharides are formed when two monosaccharides join together via a condensation reaction, forming a glycosidic bond and releasing water.

DisaccharideComponentsFound In
MaltoseGlucose + GlucoseGerminating seeds, beer
SucroseGlucose + FructoseTable sugar, plant sap
LactoseGlucose + GalactoseMilk, dairy products

🔗🔗 Polysaccharides: Complex Carbohydrates

Definition & Structure

Polysaccharides are complex carbohydrates composed of many monosaccharide units (typically hundreds to thousands) joined by glycosidic bonds through condensation reactions.

Key Properties:

  • Insoluble or poorly soluble in water (due to large size)
  • Not sweet
  • Compact storage molecules (don't affect osmotic pressure)
  • Can be branched or unbranched
  • Serve as energy storage or structural support
🌾 1. Starch (Plant Energy Storage)

Composition: Polymer of α-glucose

Starch is the primary energy storage molecule in plants. It is stored in chloroplasts (as small granules) and in storage organs like roots, tubers, and seeds.

Two Components:

  1. Amylose (10-30%): Unbranched chain of α-glucose in α-1,4 glycosidic bonds. Forms a helix structure. Compact.
  2. Amylopectin (70-90%): Branched chain with α-1,4 bonds in chains and α-1,6 bonds at branch points (every 25-30 glucose units). Highly branched = rapid glucose release.

Functions:

  • Energy storage in plants
  • Compact and insoluble (doesn't affect water potential)
  • Easily broken down to glucose when energy is needed
  • Major component of human diet (potatoes, rice, wheat, corn)
🦴 2. Glycogen (Animal Energy Storage)

Composition: Polymer of α-glucose

Glycogen is the primary energy storage molecule in animals and fungi. It is stored mainly in the liver and muscles.

Structure:

  • Similar to amylopectin but MORE highly branched
  • Branches occur every 8-12 glucose units
  • α-1,4 glycosidic bonds in chains; α-1,6 bonds at branch points
  • More compact than starch

Functions:

  • Short-term energy storage in animals
  • Stored in liver (maintains blood glucose) and muscles (for muscle contraction)
  • Highly branched = VERY RAPID glucose release when energy is needed
  • Compact and insoluble

🔍 Why highly branched? More branch points = more ends where enzymes can simultaneously break off glucose = faster mobilization of energy!

Starch vs. Glycogen
FeatureStarchGlycogen
Found InPlantsAnimals, fungi
Monomerα-glucoseα-glucose
BranchingLess branched (every 25-30 units)More branched (every 8-12 units)
CompactnessCompactMore compact
Glucose ReleaseSlowerVery rapid
Storage LocationChloroplasts, storage organsLiver, muscles

🌳 Cellulose: Structural Polysaccharide

Structure & Function of Cellulose

What is Cellulose?

Cellulose is a structural polysaccharide found in plant cell walls. It is the most abundant organic compound on Earth, making up about 33% of all plant matter.

Composition: Polymer of β-glucose units

Molecular Structure

Key Structural Features:

  1. Monomer: β-glucose units (NOT α-glucose)
  2. Bonds: β-1,4 glycosidic bonds between glucose units
  3. Chain length: 500-14,000 glucose molecules per cellulose chain
  4. Configuration: Alternate β-glucose molecules are rotated 180° relative to neighbors
  5. Shape: Long, straight, unbranched chains

🔑 Critical Difference from Starch/Glycogen:

Because cellulose is made of β-glucose (not α-glucose), every other glucose molecule is flipped upside-down. This allows the chains to pack tightly together in straight, parallel arrangements.

Microfibrils and Hydrogen Bonding

Formation of Microfibrils:

  • Multiple cellulose chains (40-70) run parallel to each other
  • Hydrogen bonds form between -OH groups on adjacent chains
  • These bonds hold the chains together tightly
  • Creates cellulose microfibrils—bundles of cellulose chains
  • Microfibrils are crystalline (highly ordered) and very strong

💪 Strength: Cellulose microfibrils have tensile strength comparable to steel! The extensive hydrogen bonding between chains makes cellulose extremely strong and rigid.

Functions of Cellulose

1. Structural Support in Plant Cell Walls

Cellulose is the main component of plant cell walls. It provides rigidity and strength, allowing plants to stand upright and maintain their shape. Without cellulose, plants would collapse.

2. Resists Turgor Pressure

Plant cells have high internal water pressure (turgor). Cellulose walls prevent cells from bursting, allowing plants to maintain turgidity.

3. Dietary Fiber for Humans

Humans cannot digest cellulose (we lack the enzyme cellulase), but it functions as dietary fiber, aiding digestion and promoting bowel health.

4. Industrial Uses

Cellulose is used to make paper, cardboard, textiles (cotton, linen), biofuels, and many other products.

Why Can't Humans Digest Cellulose?

The β-1,4 glycosidic bonds in cellulose require the enzyme cellulase to break them. Humans do not produce cellulase.

We CAN digest starch (α-1,4 bonds) because we produce amylase enzymes.

🐄 Ruminants (cows, sheep) and termites CAN digest cellulose because they harbor symbiotic bacteria/protozoa in their guts that produce cellulase.

⚖️ Starch vs. Cellulose: Why So Different?

FeatureStarchCellulose
Monomerα-glucoseβ-glucose
Bond Typeα-1,4 and α-1,6 glycosidicβ-1,4 glycosidic
StructureCoiled/branchedStraight, unbranched
FunctionEnergy storageStructural support
Digestible by Humans?Yes (amylase enzyme)No (lack cellulase enzyme)
Hydrogen BondingLimited, flexibleExtensive, rigid
StrengthWeakVery strong (like steel)

🔬 Glycoproteins

What are Glycoproteins?

Glycoproteins are conjugated proteins—molecules composed of a protein covalently bonded to one or more carbohydrate (sugar) chains. They are formed through a process called glycosylation.

Glyco = sugar/carbohydrate | Protein = polypeptide chain

Structure of Glycoproteins

Components
  • Protein component: Polypeptide chain (made of amino acids)
  • Carbohydrate component: Oligosaccharides (short sugar chains, typically 2-15 sugar units)
  • Bond: Covalent glycosidic bond between protein and carbohydrate
Types of Glycosylation

1. N-Linked Glycosylation

Carbohydrate attaches to the nitrogen (N) atom in the side chain of the amino acid asparagine. Occurs in the endoplasmic reticulum and Golgi apparatus.

2. O-Linked Glycosylation

Carbohydrate attaches to the oxygen (O) atom in the -OH group of amino acids serine or threonine. Occurs primarily in the Golgi apparatus.

Functions of Glycoproteins

1. Cell-Cell Recognition

Glycoproteins on cell surfaces act as identification tags. They allow cells to recognize each other as "self" vs. "foreign." Important for immune responses and tissue formation.

2. Cell Adhesion

Help cells stick together to form tissues. Glycoproteins bind to other glycoproteins or proteins on adjacent cells, holding tissues together.

3. Cell Signaling (Receptors)

Many membrane receptor proteins are glycoproteins. The carbohydrate portion helps receptors bind to signaling molecules (hormones, growth factors).

4. Immune Response

Antibodies (immunoglobulins) are glycoproteins. Blood group antigens (A, B, O) are determined by glycoproteins on red blood cells.

5. Structural Stability

The carbohydrate portion makes proteins more stable and soluble. It protects proteins from degradation.

6. Lubrication and Protection

Mucins are glycoproteins in mucus that lubricate and protect epithelial surfaces (respiratory tract, digestive system).

Examples of Glycoproteins

GlycoproteinLocation/Function
Antibodies (IgG, IgM)Blood; immune defense against pathogens
Blood group antigens (A, B, O)Red blood cell surface; determine blood type
MucinsMucus; lubricate and protect epithelial surfaces
Hormones (e.g., FSH, LH, hCG)Blood; regulate physiological processes
Receptor proteinsCell membranes; cell signaling
CollagenConnective tissue; structural support

🔑 Key Point: Glycoproteins form the glycocalyx—a carbohydrate-rich layer on the outer surface of cell membranes that plays crucial roles in cell recognition, adhesion, and protection.

💧 Lipids and Phospholipids

What are Lipids?

Lipids are a diverse group of hydrophobic (water-insoluble) or amphipathic (partially water-soluble) organic molecules. Unlike carbohydrates and proteins, lipids are not polymers—they don't consist of repeating monomer units.

Lipids are primarily composed of carbon, hydrogen, and oxygen, but have a much lower proportion of oxygen than carbohydrates.

🧈 Triglycerides (Fats and Oils)

Structure of Triglycerides

Triglycerides are the most common type of lipid. They are formed by condensation reactions between:

Components:

  • 1 glycerol molecule: A 3-carbon alcohol with 3 hydroxyl (-OH) groups
  • 3 fatty acid molecules: Long hydrocarbon chains with a carboxyl group (-COOH) at one end

Formation:

  1. Each fatty acid undergoes a condensation reaction with one of the -OH groups on glycerol
  2. An ester bond forms between glycerol and each fatty acid
  3. 3 water molecules are released (one per ester bond)
  4. Result: A triglyceride molecule with 3 ester bonds
Types of Fatty Acids

1. Saturated Fatty Acids

  • No double bonds between carbon atoms
  • All carbons are "saturated" with hydrogen atoms
  • Straight chains that pack tightly together
  • Solid at room temperature (e.g., butter, lard)
  • Higher melting point
  • Found mostly in animal fats

2. Unsaturated Fatty Acids

  • One or more double bonds between carbon atoms (C=C)
  • Fewer hydrogen atoms than saturated fats
  • Kinked/bent chains (due to double bonds) that don't pack tightly
  • Liquid at room temperature (oils)
  • Lower melting point
  • Found mostly in plant oils and fish
  • Monounsaturated: 1 double bond (e.g., olive oil)
  • Polyunsaturated: Multiple double bonds (e.g., sunflower oil, fish oil)
Functions of Triglycerides

1. Long-Term Energy Storage

Lipids store more than twice as much energy per gram as carbohydrates (9 kcal/g vs. 4 kcal/g). They are the body's main long-term energy reserve.

2. Thermal Insulation

Subcutaneous fat layer insulates against heat loss. Important for maintaining body temperature, especially in cold climates.

3. Protection/Cushioning

Fat pads around organs (kidneys, eyes) absorb shock and protect against physical damage.

4. Buoyancy

Lipids are less dense than water, helping aquatic mammals (whales, seals) float.

🧬 Phospholipids: Cell Membrane Components

Structure of Phospholipids

Phospholipids are modified triglycerides that are the primary structural components of cell membranes.

Components:

  • 1 glycerol molecule
  • 2 fatty acid chains (not 3 like triglycerides)
  • 1 phosphate group (attached to the 3rd position of glycerol)
  • Often an additional small molecule attached to the phosphate (e.g., choline, serine)

Formation:

  • 2 ester bonds form between glycerol and 2 fatty acids (condensation)
  • 1 bond forms between glycerol and phosphate group
  • Phosphate may be further linked to another molecule (e.g., choline in phosphatidylcholine)
🔑 Amphipathic Nature of Phospholipids

Phospholipids are amphipathic = they have both hydrophilic and hydrophobic regions

💧 Hydrophilic Head

  • Consists of the glycerol and phosphate group
  • Polar and often charged
  • "Water-loving" - interacts with water

🔥 Hydrophobic Tails

  • Consists of the 2 fatty acid chains
  • Nonpolar hydrocarbons
  • "Water-fearing" - repelled by water

Function: Formation of the Phospholipid Bilayer

When placed in water, phospholipids spontaneously arrange themselves into a bilayer. The hydrophilic heads face the outer and inner aqueous environments, while the hydrophobic tails are shielded in the middle. This bilayer is the fundamental structure of all cell membranes.

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